Altered oligodendrocyte heterogeneity in Multiple sclerosis.
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Altered human oligodendrocyte heterogeneity in multiple sclerosis.
Abstract
Oligodendrocyte pathology is increasingly implicated in neurodegenerative diseases as oligodendrocytes both myelinate and provide metabolic support to axons. In multiple sclerosis (MS), demyelination in the central nervous system thus leads to neurodegeneration, but the severity of MS between patients is very variable. Disability does not correlate well with the extent of demyelination<sup>1</sup>, which suggests that other factors contribute to this variability. One such factor may be oligodendrocyte heterogeneity. Not all oligodendrocytes are the same-those from the mouse spinal cord inherently produce longer myelin sheaths than those from the cortex<sup>2</sup>, and single-cell analysis of the mouse central nervous system identified further differences<sup>3,4</sup>. However, the extent of human oligodendrocyte heterogeneity and its possible contribution to MS pathology remain unknown. Here we performed single-nucleus RNA sequencing from white matter areas of post-mortem human brain from patients with MS and from unaffected controls. We identified subclusters of oligodendroglia in control human white matter, some with similarities to mouse, and defined new markers for these cell states. Notably, some subclusters were underrepresented in MS tissue, whereas others were more prevalent. These differences in mature oligodendrocyte subclusters may indicate different functional states of oligodendrocytes in MS lesions. We found similar changes in normal-appearing white matter, showing that MS is a more diffuse disease than its focal demyelination suggests. Our findings of an altered oligodendroglial heterogeneity in MS may be important for understanding disease progression and developing therapeutic approaches.
doi:10.1038/s41586-019-0903-2 ↗ PMID 30747918 ↗ PMC6544546 ↗
Study facts
- Organism
- Homo sapiens
- Platform
- Illumina HiSeq 2500
- Age group
- adult
- Disease groups
- —
- Anatomical sites
- white matter brain tissue
Data availability
- Raw counts
- Processed matrix
File types
TXT
Files and samples
- White Matter brain tissue20
| Accession | Sample | Tissue | Molecule |
|---|---|---|---|
GSM3323805 |
CO28 | White Matter brain tissue | total RNA |
GSM3323806 |
CO25 | White Matter brain tissue | total RNA |
GSM3323807 |
MS176_NAWM | White Matter brain tissue | total RNA |
GSM3323808 |
MS176_Remyelinating | White Matter brain tissue | total RNA |
GSM3323809 |
MS176_Chronic_Inactive | White Matter brain tissue | total RNA |
GSM3323810 |
MS176_Chronic_Active | White Matter brain tissue | total RNA |
GSM3323811 |
CO39 | White Matter brain tissue | total RNA |
GSM3323812 |
CO14 | White Matter brain tissue | total RNA |
GSM3323813 |
MS242_Chronic_Active2 | White Matter brain tissue | total RNA |
GSM3323814 |
MS242 Chronic_Inactive | White Matter brain tissue | total RNA |
GSM3323815 |
MS242_Chronic_Active1 | White Matter brain tissue | total RNA |
GSM3323816 |
MS242 Remyelinating | White Matter brain tissue | total RNA |
GSM3323817 |
SD48/16 | White Matter brain tissue | total RNA |
GSM3323818 |
MS122_NAWM | White Matter brain tissue | total RNA |
GSM3323819 |
MS122_Chronic_Inactive | White Matter brain tissue | total RNA |
GSM3323820 |
MS122_Active | White Matter brain tissue | total RNA |
GSM3323821 |
MS121_NAWM | White Matter brain tissue | total RNA |
GSM3323822 |
MS121_Active2 | White Matter brain tissue | total RNA |
GSM3323823 |
MS121_Active1 | White Matter brain tissue | total RNA |
GSM3323824 |
MS121_Chronic_Active | White Matter brain tissue | total RNA |
Strengths & limitations for reuse
Strengths
- Raw counts are advertised
- Processed matrices are advertised
- Cell metadata are advertised
- Participant counts are documented
Extraction evidence & provenance
Each extracted field is shown with the source excerpt and location used to resolve it.
Assay
| Field | Value | Evidence |
|---|---|---|
assay.assay_type |
single-nucleus RNA sequencing |
single nuclei RNA-sequencing (snRNA-seq) Section |
assay.library_chemistry |
10x Genomics Single Cell 3' v2 |
10x Genomics Single Cell 3' v2 Section |
assay.platform |
Illumina HiSeq 2500 |
Illumina HiSeq 2500 Section |
assay.reference_genome |
GRCh38 |
genome build: GRCh38 Section |
assay.sequencing_type |
snrna_seq |
single nuclei RNA-sequencing (snRNA-seq) Section |
Cohort
| Field | Value | Evidence |
|---|---|---|
cohort.age_group |
adult |
Adult Section |
cohort.non_ibd_controls |
5 |
We isolated single nuclei from white matter post-mortem tissue from 5 non-neurological control samples (Ctrl) Section |
cohort.study_design |
cross_sectional inferred |
post-mortem tissue from 4 progressive Multiple sclerosis (MS) patients Section |
cohort.total_participants |
9 inferred |
We isolated single nuclei from white matter post-mortem tissue from 5 non-neurological control samples (Ctrl) and post-mortem tissue from 4 progressive Multiple sclerosis (MS) patients. Section |
Data_Assets
| Field | Value | Evidence |
|---|---|---|
data_assets.cell_metadata |
True |
GSE118257_MSCtr_snRNA_FinalAnnotationTable.txt.gz Section |
data_assets.open_access |
True |
Public on Jan 23 2019 Section |
data_assets.processed_matrix |
True |
GSE118257_MSCtr_snRNA_ExpressionMatrix_R.txt.gz Section |
data_assets.raw_counts |
True |
Processed data includes raw UMI counts matrix Section |
Processing
| Field | Value | Evidence |
|---|---|---|
processing.cell_type_annotation_method |
CellRanger processing with assigned celltype clusters and annotation tables |
Processed data includes raw UMI counts matrix with the assigned celltype clusters Section |
Specimens
| Field | Value | Evidence |
|---|---|---|
specimens.anatomical_sites |
['white matter brain tissue'] |
White Matter brain tissue Section |
specimens.number_of_samples |
20 |
20 Section |