Foundry120 atlas

Characterization and Therapeutic Application of Mesenchymal Stem Cells Derived via Definitive Endoderm from Human Embryonic Stem Cells

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Dataset overview

Participants None
Samples 34
Reuse readiness 3.7/10 evidence-backed score

Definitive Endodermal Cells Supply an in vitro Source of Mesenchymal Stem/Stromal Cells.

Abstract

Mesenchymal stem/Stromal cells (MSCs) have great therapeutic potentials, and they have been isolated from various tissues and organs including definitive endoderm (DE) organs, such as the lung, liver and intestine. MSCs have been induced from human pluripotent stem cells (hPSCs) through multiple embryonic lineages, including the mesoderm, neural crest, and extraembryonic cells. However, it remains unclear whether hPSCs could give rise to MSCs in vitro through the endodermal lineage. Here, we report that hPSC-derived, SOX17<sup>+</sup> definitive endoderm progenitors can further differentiate to cells expressing classic MSC markers, which we name definitive endoderm-derived MSCs (DE-MSCs). Single cell RNA sequencing demonstrates the stepwise emergence of DE-MSCs, while endoderm-specific gene expression can be elevated by signaling modulation. DE-MSCs display multipotency and immunomodulatory activity in vitro and possess therapeutic effects in a mouse ulcerative colitis model. This study reveals that, in addition to the other germ layers, the definitive endoderm can also contribute to MSCs and DE-MSCs could be a cell source for regenerative medicine.

Study facts

Organism
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Platform
Illumina NovaSeq 6000
Age group
—
Disease groups
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Anatomical sites
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Data availability

Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.

Strengths & limitations for reuse

Strengths

  • Raw reads are advertised
  • Sample counts are documented

Limitations

  • Not documented: feature/otu tables are advertised
  • Not documented: taxonomic tables are advertised
  • Not documented: participant counts are documented
Extraction evidence & provenance

Each extracted field is shown with the source excerpt and location used to resolve it.

Assay

FieldValueEvidence
assay.platform Illumina NovaSeq 6000 from source
ENA instrument_model=Illumina NovaSeq 6000

Section ENA study report, offset —

Data_Assets

FieldValueEvidence
data_assets.open_access True
"isOpenAccess": "Y", "license": "cc by"

Section publication metadata, offset —

data_assets.raw_reads True
"run_count": 34, "runs_sample":

Section dataset-authority, offset —

Specimens

FieldValueEvidence
specimens.number_of_samples 34 from source
ENA sample_count=34

Section ENA study report, offset —