Foundry120 atlas

Human Colitis-on-Chip Model Reveals Dual Roles of Butyrate in Epithelial and Macrophage Defense Against Candida albicans Tissue Invasion

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Dataset overview

Participants None
Samples 6
Reuse readiness 3.1/10 evidence-backed score

Human Colitis-on-Chip Model Reveals Dual Roles of Butyrate in Epithelial and Macrophage Defense Against Candida albicans Tissue Invasion.

Abstract

Microbial dysbiosis in inflammatory bowel disease (IBD) reduces intestinal butyrate levels, compromising epithelial barrier integrity and enabling overgrowth of opportunistic pathogens such as Candida albicans. Here, we present a human immunocompetent colitis-on-chip model (CooC) that mimics key features of inflamed gut mucosa, including DSS-induced epithelial damage and C. albicans tissue invasion. Using this model, we uncover dual protective roles of microbiota-derived butyrate: (i) stabilization of epithelial adherens junctions and promotion of epithelial renewal, thereby restricting fungal invasion; and (ii) modulation of macrophage function to enhance antifungal activity while attenuating inflammasome-mediated inflammation. Butyrate pretreatment preserves barrier function, limits fungal translocation, and promotes macrophage viability through the inhibition of histone deacetylase (HDAC) and the suppression of NLRP3 inflammasome activation. These findings position butyrate as a key metabolite in orchestrating epithelial-immune defense against fungal exacerbation in colitis, supporting its therapeutic and preventive potential in restoring mucosal resilience in IBD.

Study facts

Organism
Homo sapiens
Platform
NovaSeq X Plus Series
Age group
Disease groups
Anatomical sites

Data availability

Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.

Strengths & limitations for reuse

Strengths

  • Sample counts are documented

Limitations

  • Not documented: raw reads are advertised
  • Not documented: feature/otu tables are advertised
  • Not documented: taxonomic tables are advertised
  • Not documented: participant counts are documented
Extraction evidence & provenance

Each extracted field is shown with the source excerpt and location used to resolve it.

Assay

FieldValueEvidence
assay.platform NovaSeq X Plus Series
Sequencing was performed on the NovaSeq X Plus Series (PE150)

Section Bulk RNA Sequencing and Transcriptomic Analysis, offset —

assay.read_length 150
NovaSeq X Plus Series (PE150)

Section Bulk RNA Sequencing and Transcriptomic Analysis, offset —

Data_Assets

FieldValueEvidence
data_assets.open_access True
The data discussed in this manuscript have been deposited in NCBI's Gene Expression Omnibus and are accessible through GEO Series accession number GSE325894.

Section Data availability, offset —

Specimens

FieldValueEvidence
specimens.number_of_samples 6 inferred
bulk RNA sequencing (n = 3 biological replicates per condition)

Section Bulk RNA Sequencing and Transcriptomic Analysis, offset —