Foundry120 atlas

Epithelial relay of microbial signals coordinates intestinal macrophage supported barrier repair

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Dataset overview

Participants None
Samples None
Reuse readiness 3.0/10 evidence-backed score

Intestinal epithelial TLR5 signaling promotes barrier-supportive macrophages.

Abstract

Intestinal macrophages are essential for epithelial barrier repair. In homeostasis, macrophages are continuously replenished by recruitment of circulating C-C chemokine receptor 2 (CCR2)<sup>+</sup> monocytes into the intestinal lamina propria (LP), a process that requires the commensal microbiota. The specific microbial factors and downstream host pathways that coordinate macrophage replenishment are inadequately understood. Here, we show that colonization with an <i>Escherichia coli</i> isolate increased CCR2<sup>+</sup> macrophages in the intestine and ameliorated pathology in a colitis model. Using human colonic organoids, we report that <i>E. coli</i> colonization induced the secretion of C-C chemokine ligand 2 (CCL2) by intestinal epithelial stem cells, which promoted monocyte migration. Protection in vivo was abolished in the absence of epithelial CCL2. By screening a panel of <i>E. coli</i>, we identified that high flagellin expression correlated with epithelial CCL2 production. Demonstrating a requirement for <i>E. coli</i> flagellin, in vivo protection was lost in mice lacking epithelial Toll-like receptor 5 (TLR5) or after colonization with flagellin-deficient <i>E. coli</i>. Thus, epithelial flagellin sensing by TLR5 recruits CCR2<sup>+</sup> macrophages to the intestine, promoting barrier repair.

Study facts

Organism
Homo sapiens
Platform
Age group
Disease groups
Anatomical sites

Data availability

Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.

Strengths & limitations for reuse

Limitations

  • Not documented: raw reads are advertised
  • Not documented: feature/otu tables are advertised
  • Not documented: taxonomic tables are advertised
  • Not documented: participant counts are documented
Extraction evidence & provenance

Each extracted field is shown with the source excerpt and location used to resolve it.

Assay

FieldValueEvidence
assay.sequencing_type metatranscriptomics inferred
Using bacterial transcriptome analysis, we identified high flagellin expression in AIEC isolates

Section study.description, offset 2250

Cohort

FieldValueEvidence
cohort.treatment_exposure_documented True
Both UD and DF monolayers were left untreated (NT) or colonized with AIEC 541-15 or non-AIEC T75.

Section study.description, offset 1900

Specimens

FieldValueEvidence
specimens.body_site colon inferred
we utilized human colonoid-derived monolayers as a model to study epithelial responses

Section study.description, offset 1500