Foundry120 atlas

Epithelial relay of microbial signals coordinates intestinal macrophage supported barrier repair

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Dataset overview

Participants None
Samples None
Reuse readiness 3.0/10 evidence-backed score

Intestinal epithelial TLR5 signaling promotes barrier-supportive macrophages.

Abstract

Intestinal macrophages are essential for epithelial barrier repair. In homeostasis, macrophages are continuously replenished by recruitment of circulating C-C chemokine receptor 2 (CCR2)<sup>+</sup> monocytes into the intestinal lamina propria (LP), a process that requires the commensal microbiota. The specific microbial factors and downstream host pathways that coordinate macrophage replenishment are inadequately understood. Here, we show that colonization with an <i>Escherichia coli</i> isolate increased CCR2<sup>+</sup> macrophages in the intestine and ameliorated pathology in a colitis model. Using human colonic organoids, we report that <i>E. coli</i> colonization induced the secretion of C-C chemokine ligand 2 (CCL2) by intestinal epithelial stem cells, which promoted monocyte migration. Protection in vivo was abolished in the absence of epithelial CCL2. By screening a panel of <i>E. coli</i>, we identified that high flagellin expression correlated with epithelial CCL2 production. Demonstrating a requirement for <i>E. coli</i> flagellin, in vivo protection was lost in mice lacking epithelial Toll-like receptor 5 (TLR5) or after colonization with flagellin-deficient <i>E. coli</i>. Thus, epithelial flagellin sensing by TLR5 recruits CCR2<sup>+</sup> macrophages to the intestine, promoting barrier repair.

Study facts

Organism
Homo sapiens
Platform
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Age group
—
Disease groups
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Anatomical sites
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Data availability

Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.

Strengths & limitations for reuse

Limitations

  • Not documented: raw reads are advertised
  • Not documented: feature/otu tables are advertised
  • Not documented: taxonomic tables are advertised
  • Not documented: participant counts are documented
Extraction evidence & provenance

Each extracted field is shown with the source excerpt and location used to resolve it.

Assay

FieldValueEvidence
assay.sequencing_type metatranscriptomics inferred
Using bacterial transcriptome analysis, we identified high flagellin expression in AIEC isolates

Section study.description, offset 2250

Cohort

FieldValueEvidence
cohort.treatment_exposure_documented True
Both UD and DF monolayers were left untreated (NT) or colonized with AIEC 541-15 or non-AIEC T75.

Section study.description, offset 1900

Specimens

FieldValueEvidence
specimens.body_site colon inferred
we utilized human colonoid-derived monolayers as a model to study epithelial responses

Section study.description, offset 1500