Foundry120 atlas

Investigation into the impact of vitamin D supplementation on the microbiota of patients with and without ulcerative colitis.

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Dataset overview

Participants 25
Samples None
Reuse readiness 4.4/10 evidence-backed score

The Effect of Vitamin D on Intestinal Inflammation and Faecal Microbiota in Patients with Ulcerative Colitis.

Abstract

<h4>Background and aims</h4>Vitamin D may be immunomodulatory and alter faecal microbiota, but results from clinical studies in humans to date have been inconclusive. This study aimed to assess the effect of vitamin D replacement in vitamin D-deficient patients with and without ulcerative colitis [UC] on inflammation and faecal microbiota.<h4>Methods</h4>Vitamin D was replaced over 8 weeks in patients with active UC [defined by faecal calprotectin ≥ 100 µg/g], inactive UC [faecal calprotectin < 100 µg/g] and non-inflammatory bowel disease [IBD] controls with baseline serum 25[OH] vitamin D <50 nmol/l, and markers of inflammation and faecal microbiota were analysed.<h4>Results</h4>Eight patients with active UC, nine with inactive UC and eight non-IBD controls received 40000 units cholecalciferol weekly for 8 weeks. Mean baseline 25[OH] vitamin D increased from 34 [range 12-49] to 111 [71-158] nmol/l [p < 0.001], with no difference across the groups [p = 0.32]. In patients with active UC, faecal calprotectin levels decreased from a median 275 to 111 µg/g [p = 0.02], platelet count decreased [mean 375 to 313 × 109/l, p = 0.03] and albumin increased [mean 43 to 45 g/l, p = 0.04]. These parameters did not change in patients with inactive UC or non-IBD controls. No changes in overall faecal bacterial diversity were noted although a significant increase in Enterobacteriaceae abundance was observed in patients with UC [p = 0.03].<h4>Conclusions</h4>Vitamin D supplementation was associated with reduced intestinal inflammation in patients with active UC, with a concomitant increase in Enterobacteriaceae but no change in overall faecal microbial diversity.

Study facts

Organism
Platform
Age group
adult
Disease groups
Non-IBD controls, Ulcerative colitis
Anatomical sites

Data availability

Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.

Strengths & limitations for reuse

Strengths

  • Participant counts are documented

Limitations

  • Not documented: raw reads are advertised
  • Not documented: feature/otu tables are advertised
  • Not documented: taxonomic tables are advertised
Extraction evidence & provenance

Each extracted field is shown with the source excerpt and location used to resolve it.

Cohort

FieldValueEvidence
cohort.age_group adult
{"descriptorName": "Adult"}

Section meshHeadingList, offset —

cohort.disease_activity_metadata_available True
patients with active UC (defined by faecal calprotectin ≥ 100 µg/g), inactive UC (faecal calprotectin < 100 µg/g)

Section study.description, offset 330

cohort.non_ibd_controls 8
Eight patients with active UC, 9 with inactive UC and 8 non-IBD controls

Section study.description, offset 470

cohort.study_design longitudinal inferred
Vitamin D was replaced over 8 weeks

Section study.description, offset 300

cohort.total_participants 25 computed
Eight patients with active UC, 9 with inactive UC and 8 non-IBD controls

Section study.description, offset 470

cohort.treatment_exposure_documented True
Vitamin D was replaced over 8 weeks to patients with active UC

Section study.description, offset 300

cohort.treatment_response_metadata_available True
Faecal calprotectin levels reduced from median 275 to 111

Section study.description, offset 650

cohort.ulcerative_colitis_participants 17 computed
Eight patients with active UC, 9 with inactive UC and 8 non-IBD controls

Section study.description, offset 470

Specimens

FieldValueEvidence
specimens.body_site faeces
alter faecal microbiota

Section abstractText, offset 330

specimens.inflamed_status_available True
patients with active UC (defined by faecal calprotectin ≥ 100 µg/g), inactive UC (faecal calprotectin < 100 µg/g)

Section study.description, offset 330

specimens.longitudinal_sampling True inferred
Vitamin D was replaced over 8 weeks

Section study.description, offset 300

specimens.sample_type stool
markers of inflammation and stool microbiota analysed

Section study.description, offset 390