Foundry120 atlas

Sodium butyrate alleviates DSS-induced inflammatory bowel disease by inhibiting ferroptosis and modulating ERK/STAT3 signaling and intestinal flora

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Dataset overview

Participants None
Samples None
Reuse readiness 4.3/10 evidence-backed score

Sodium butyrate alleviates DSS-induced inflammatory bowel disease by inhibiting ferroptosis and modulating ERK/STAT3 signaling and intestinal flora.

Abstract

<h4>Background</h4>Inflammatory bowel disease (IBD), encompassing Crohn's disease (CD) and ulcerative colitis (UC), can seriously impact patients' quality of life. Sodium butyrate (NaB), a product of dietary fiber fermentation, has been shown to alleviate IBD symptoms. Some studies have shown that it is related to ferroptosis. However, the precise mechanism linking NaB, IBD, and ferroptosis is not clear.<h4>Objective</h4>This study aimed to demonstrate that NaB suppresses ferroptosis, thereby alleviating inflammatory bowel disease (IBD) through modulation of the extracellular regulated protein kinases/signal transducer and activator of transcription 3 (ERK/STAT3) signaling pathway and intestinal flora.<h4>Methods</h4>An IBD model was established using 2.5% (<i>w/v</i>) dextran sulfate sodium (DSS). Mice were orally administered low-dose NaB, high-dose NaB , or 5-aminosalicylic acid (5-ASA). Ferroptosis-related molecules were measured using specific kits, and western blotting (WB) and real-time polymerase chain reaction (RT-qPCR) were used to determine the levels of the target molecules.<h4>Results</h4>NaB alleviated symptoms in IBD mice, including reduced weight loss, prolonged colon length, reduced disease activity index (DAI), and reduced spleen index and mRNA expression of inflammatory factors. Additionally, NaB reduced the content of Fe<sup>2+</sup> and myeloperoxidase (MPO) and increased the content of GSH and the activity of superoxide dismutase (SOD), which reflected NaB-inhibited ferroptosis. Moreover, western blotting showed that NaB enhanced STAT3 and ERK phosphorylation. In addition, NaB regulates the composition and functions of flora related to IBD.<h4>Conclusion</h4>NaB alleviates IBD by inhibiting ferroptosis and modulating ERK/STAT3 signaling and the intestinal flora.

Study facts

Organism
Platform
MiSeq/HiSeq
Age group
Disease groups
Anatomical sites

Data availability

Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.

Strengths & limitations for reuse

Limitations

  • Not documented: raw reads are advertised
  • Not documented: feature/otu tables are advertised
  • Not documented: taxonomic tables are advertised
  • Not documented: participant counts are documented
Extraction evidence & provenance

Each extracted field is shown with the source excerpt and location used to resolve it.

Assay

FieldValueEvidence
assay.paired_end True
The amplified products were sequenced using the MiSeq/HiSeq platform with paired-end sequencing.

Section 16S rRNA amplicon sequencing, offset 10750

assay.platform MiSeq/HiSeq
The amplified products were sequenced using the MiSeq/HiSeq platform with paired-end sequencing.

Section 16S rRNA amplicon sequencing, offset 10750

assay.primers_reported False inferred
Conserved regions were targeted to design universal primers for PCR amplification of one or more highly variable regions of 16S rRNA.

Section 16S rRNA amplicon sequencing, offset 10600

assay.sequencing_type amplicon_16s
16S rRNA amplicon sequencing

Section 16S rRNA amplicon sequencing, offset 10600

Cohort

FieldValueEvidence
cohort.disease_activity_metadata_available True
the Disease Activity Index (DAI) was calculated using the following formula: DAI = (Weight loss score + Stool score + Bleeding score)/3.

Section Body weight and disease activity index (DAI) assessment, offset 5700

cohort.treatment_exposure_documented True
mice of NaB-L group were administrated 500 mg/kg body weight NaB, mice of NaB-H group were administrated 1 g/kg body weight NaB.

Section Animal experiments, offset 4200

cohort.treatment_response_metadata_available True
the DAI of the control, NaB-L, NaB-H, and 5-ASA groups was notably lower than that of the model group

Section General condition of mice, offset 9400

Data_Assets

FieldValueEvidence
data_assets.open_access True
Creative Commons Attribution 4.0 International

Section datacite_record, offset 15100

Specimens

FieldValueEvidence
specimens.body_site colon
samples were collected, including blood, liver, spleen, colon, and colon contents.

Section Animal experiments, offset 5100

specimens.longitudinal_sampling False inferred
After a 12-hour fasting, all mice were euthanized and samples were collected

Section Animal experiments, offset 5100