Additional file 2 of A diet based on cured acorn-fed ham with oleic acid content promotes anti-inflammatory gut microbiota and prevents ulcerative colitis in an animal model
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A diet based on cured acorn-fed ham with oleic acid content promotes anti-inflammatory gut microbiota and prevents ulcerative colitis in an animal model.
Abstract
<h4>Background</h4>Diets based on meat products are not recommended in the case of ulcerative colitis (UC). The objective here is to test if some traditional cured meat products, as acorn-fed ham (high levels of oleic acid), may be useful for controlling inflammatory diseases as UC in animal models, which could represent a new dietary complementary intervention in the prevention of this inflammatory disease in humans.<h4>Methods</h4>Two rat cohorts have been used: conventional vegetable rat feed and acorn-fed ham. UC was induced with DSS in drinking water ad libitum for 1 week. Short-chain fatty acids (SCFAs) and 16S rRNA metagenomics from bacterial populations were analyzed in cecum samples. Colon samples were analyzed for histological parameters.<h4>Results</h4>Acorn-fed ham diet induced changes in gut microbiota composition, with pronounced enrichments in anti-inflammatory bacterial genera (Alistipes, Blautia, Dorea, Parabacteroides). The animals with this diet showed a strong reduction in most parameters associated to ulcerative colitis: disease activity index, macroscopic score of colitis, epitelium alteration in colon mucosa, inflammatory cell density in colon, myeloperoxidase titers in colon, proinflammatory cytokines (IL-17, IFN-γ). Also, acorn-fed ham diet animals showed increased total antioxidant activity an oleic acid levels in plasma, as well as higher short-chain fatty acid concentrations in cecum (isobutyric, isovaleric and valeric).<h4>Conclusions</h4>In the acorn-fed ham cohort, as a result of the dietary intake of oleic acid and low intake of omega-6 fatty acids, a strong preventive effect against UC symptoms was observed.
doi:10.1186/s12944-020-01205-x ↗ PMID 32093685 ↗ PMC7041278 ↗
Study facts
- Organism
- —
- Platform
- ION PGM System
- Age group
- —
- Disease groups
- —
- Anatomical sites
- —
Data availability
Specific data assets have not been resolved from the source yet — see the source repository below for the full file listing.
Strengths & limitations for reuse
Strengths
- Raw reads are advertised
- Taxonomic tables are advertised
- Participant-to-sample mapping is available
- Participant counts are documented
Limitations
- Not documented: feature/otu tables are advertised
Extraction evidence & provenance
Each extracted field is shown with the source excerpt and location used to resolve it.
Assay
| Field | Value | Evidence |
|---|---|---|
assay.platform |
ION PGM System |
on the ION PGM™ System Section |
assay.sequencing_type |
amplicon_16s |
gDNA extraction and 16S rRNA sequencing for metagenomics Section |
Cohort
| Field | Value | Evidence |
|---|---|---|
cohort.disease_activity_metadata_available |
True |
Finally, disease activity index (DAI) was measured in all animals. Section |
cohort.total_participants |
20 |
A total of 20 male Fischer 344 rats Section |
cohort.treatment_exposure_documented |
True |
UC was induced in 8 rats from each cohort... using autoclaved drinking water containing 3% DSS Section |
cohort.treatment_response_metadata_available |
True |
Finally, disease activity index (DAI) was measured in all animals. Section |
Data_Assets
| Field | Value | Evidence |
|---|---|---|
data_assets.open_access |
True |
Creative Commons Attribution 4.0 International Section |
data_assets.pipeline_or_tool_versions |
True |
QIIME 2 (v.2017.6.0)... R software (v3.2.4) Section |
data_assets.raw_reads |
True |
All raw metagenomics data have been deposited at NCBI SRA database (submission PRJNA524796). Section |
data_assets.taxonomic_table |
True |
This excel table includes the percentages for each taxonomic level Section |
Specimens
| Field | Value | Evidence |
|---|---|---|
specimens.body_site |
cecum |
frozen (− 80 °C) cecum feces Section |
specimens.inflamed_status_available |
True |
UC was induced in 8 rats from each cohort Section |
specimens.participant_to_sample_mapping_available |
True inferred |
used for comparing frequencies between rat individuals and cohorts Section |
specimens.sample_type |
stool |
gDNA was extracted from 200 mg of frozen (− 80 °C) cecum feces Section |